TSS: Rfhg 173738.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AF274951:44 AB527924:-55 KJ893442:-55 BC007944:-64 AL357456:-67 BC024151:-77 AL109701:-79 ENST00000560490.1:-96 AK098383:-96 ENST00000530028.3:-98 NM_014335.3:-98 AF349444:-109 AF109873:-118 AF092135:-118 AK315365:-123 BC114946:-131 BC114944:-131 AF274947:224 | |||
|annotation=exon (NM_014335, exon 1 of 1) | |annotation=exon (NM_014335, exon 1 of 1) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=EP300 interacting inhibitor of differentiation 1 | |gene_description=EP300 interacting inhibitor of differentiation 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000255302 | |nearest_ensembl=ENSG00000255302 | ||
|nearest_promoter_id=NM_014335 | |nearest_promoter_id=NM_014335 | ||
|nearest_refseq=NM_014335 | |nearest_refseq=NM_014335 | ||
|nearest_transcripts=AB527924:-55 KJ893442:-55 BC007944:-64 AL357456:-67 BC024151:-77 AL109701:-79 ENST00000560490.1:-96 AK098383:-96 ENST00000530028.3:-98 NM_014335.3:-98 AF349444:-109 AF109873:-118 AF092135:-118 AK315365:-123 BC114946:-131 BC114944:-131 AF274947:224 | |||
|nearest_unigene=Hs.255973 | |nearest_unigene=Hs.255973 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=48878232 | |start=48878232 | ||
Latest revision as of 10:14, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2786348,EH38E1760479) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 102 |
|---|---|
| Nearest PromoterID: | NM_014335 |
| Entrez ID: | 23741 |
| Nearest Unigene: | Hs.255973 |
| Nearest Refseq: | NM_014335 |
| Nearest Ensembl: | ENSG00000255302 |
| Gene Name: | |
| Gene Alias: | C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |