TSS: Rfhg 179759.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000564033.1:79 | |||
|annotation=intron (NM_001252073, intron 1 of 5) | |annotation=intron (NM_001252073, intron 1 of 5) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 15: | Line 16: | ||
|gene_description=SLC9A3 regulator 2 | |gene_description=SLC9A3 regulator 2 | ||
|gene_id=9351 | |gene_id=9351 | ||
|gene_name= | |gene_name=NHERF family PDZ scaffold protein 2 | ||
|gene_source=HGNC:11076 | |gene_source=HGNC:11076 | ||
|gene_symbol=NHERF2 | |gene_symbol=NHERF2 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11076 | |hgnc_mgi_id=HGNC:11076 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000065054 | |nearest_ensembl=ENSG00000065054 | ||
|nearest_promoter_id=NM_001252073 | |nearest_promoter_id=NM_001252073 | ||
|nearest_refseq=NM_004785 | |nearest_refseq=NM_004785 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.440896 | |nearest_unigene=Hs.440896 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=2035881 | |start=2035881 | ||
Latest revision as of 12:07, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2836715,EH38E1796285) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2597 |
|---|---|
| Nearest PromoterID: | NM_001252073 |
| Entrez ID: | 9351 |
| Nearest Unigene: | Hs.440896 |
| Nearest Refseq: | NM_004785 |
| Nearest Ensembl: | ENSG00000065054 |
| Gene Name: | NHERF family PDZ scaffold protein 2 |
| Gene Alias: | E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.409091 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.