TSS: Rfhg 179779.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000563284.3:12 ENST00000570072.5:-77 NR_135175.1:-77 | |||
|annotation=promoter-TSS (NR_135175) | |annotation=promoter-TSS (NR_135175) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=uncharacterized LOC105371049 | |gene_description=uncharacterized LOC105371049 | ||
|gene_id=105371049 | |gene_id=105371049 | ||
|gene_name= | |gene_name=PKD1 antisense RNA 1 | ||
|gene_source=EntrezGene:105371049 | |gene_source=EntrezGene:105371049 | ||
|gene_symbol=PKD1-AS1 | |gene_symbol=PKD1-AS1 | ||
| Line 21: | Line 22: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000259933 | |nearest_ensembl=ENSG00000259933 | ||
|nearest_promoter_id=NR_135175 | |nearest_promoter_id=NR_135175 | ||
|nearest_refseq=NR_135175 | |nearest_refseq=NR_135175 | ||
|nearest_transcripts=ENST00000570072.5:-77 NR_135175.1:-77 | |||
|nearest_unigene=Hs.710709 | |nearest_unigene=Hs.710709 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=2091513 | |start=2091513 | ||
Latest revision as of 12:08, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2836794,EH38E1796346) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 84 |
|---|---|
| Nearest PromoterID: | NR_135175 |
| Entrez ID: | 105371049 |
| Nearest Unigene: | Hs.710709 |
| Nearest Refseq: | NR_135175 |
| Nearest Ensembl: | ENSG00000259933 |
| Gene Name: | PKD1 antisense RNA 1 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.214286 |
| GC%: | 0.733333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.