TSS: Rfhg 179969.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000572883.1:0 AK025903:0 LF340662:0 MA576239:0 ENST00000574593.1:-35 LF340660:-65 MA576237:-65 ENST00000572721.1:128 LF340659:-202 MA576236:-202 ENST00000573311.1:353 LF340665:428 MA576242:428 BC009062:462 LF340657:-473 MA576234:-473
|annotation=exon (NM_016333, exon 11 of 15)
|annotation=exon (NM_016333, exon 11 of 15)
|ccre_category=N
|ccre_category=N
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|gene_description=elongin B
|gene_description=elongin B
|gene_id=23524
|gene_id=23524
|gene_name=ELOB
|gene_name=serine/arginine repetitive matrix 2
|gene_source=HGNC:16639
|gene_source=HGNC:16639
|gene_symbol=SRRM2
|gene_symbol=SRRM2
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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:16639
|hgnc_mgi_id=HGNC:16639
|methods=CAGE{{!}}C1CAGE
|nearest_ensembl=ENSG00000103363
|nearest_ensembl=ENSG00000103363
|nearest_promoter_id=NM_007108
|nearest_promoter_id=NM_007108
|nearest_refseq=NM_007108
|nearest_refseq=NM_007108
|nearest_transcripts=ENST00000574593.1:-35 LF340660:-65 MA576237:-65 ENST00000572721.1:128 LF340659:-202 MA576236:-202 ENST00000573311.1:353 LF340665:428 MA576242:428 BC009062:462 LF340657:-473 MA576234:-473
|nearest_unigene=Hs.172772
|nearest_unigene=Hs.172772
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}PRJDB5282
|species=human
|species=human
|start=2767542
|start=2767542
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|tata_box=
|tata_box=
|transcript_name=ENST00000572883.1 AK025903
|transcript_name=ENST00000572883.1 AK025903
|tss_cluster_detected=2
|tss_id=rfhg_179969.1
|tss_id=rfhg_179969.1
|tss_id_v3=hg_152297.1
|tss_id_v3=hg_152297.1

Latest revision as of 12:11, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_179969.1
TSS ID(Version3):hg_152297.1
Species:human
Chr:chr16
Start:2767542
End:2767728
Strand:+
Source datasetsFANTOM5|PRJDB5282
ProtocolCAGE|C1CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000572883.1:0
AK025903:0
GeneID:23524
HGNC/MGI_ID:HGNC:16639
UniProt_ID:I3L3Q8
Nearer transcript ids and distances:
  • ENST00000574593.1:-35
  • LF340660:-65
  • MA576237:-65
  • ENST00000572721.1:128
  • LF340659:-202
  • MA576236:-202
  • ENST00000573311.1:353
  • LF340665:428
  • MA576242:428
  • BC009062:462
  • LF340657:-473
  • MA576234:-473
view more...
Gene_name:serine/arginine repetitive matrix 2
Gene_symbol:SRRM2
Gene_synonyms:Cwc21 KIAA0324 SRL300 SRm300
Gene_source:HGNC:16639



TATA-Box annotation

Distance to TSS:9645
Nearest PromoterID:NM_007108
Entrez ID:6923
Nearest Unigene:Hs.172772
Nearest Refseq:NM_007108
Nearest Ensembl:ENSG00000103363
Gene Name:serine/arginine repetitive matrix 2
Gene Alias:SIII|TCEB2
Gene Type:protein-coding
CpG%:0.048387
GC%:0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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