TSS: Rfhg 179971.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=BC009062:-10 LF340665:-44 MA576242:-44 ENST00000573311.1:-119 AL833672:143 LF340667:153 MA576244:153 LF340668:269 MA576245:269 ENST00000571041.1:291 ENST00000570705.1:314 ENST00000572721.1:-344 LF340662:-475 MA576239:-475 ENST00000572883.1:-478 AK025903:-479
|annotation=exon (NM_016333, exon 11 of 15)
|annotation=exon (NM_016333, exon 11 of 15)
|ccre_category=pELS
|ccre_category=pELS
Line 15: Line 16:
|gene_description=elongin B
|gene_description=elongin B
|gene_id=23524
|gene_id=23524
|gene_name=ELOB
|gene_name=serine/arginine repetitive matrix 2
|gene_source=HGNC:16639
|gene_source=HGNC:16639
|gene_symbol=SRRM2
|gene_symbol=SRRM2
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|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:16639
|hgnc_mgi_id=HGNC:16639
|methods=CAGE
|nearest_ensembl=ENSG00000103363
|nearest_ensembl=ENSG00000103363
|nearest_promoter_id=NM_007108
|nearest_promoter_id=NM_007108
|nearest_refseq=NM_007108
|nearest_refseq=NM_007108
|nearest_transcripts=LF340665:-44 MA576242:-44 ENST00000573311.1:-119 AL833672:143 LF340667:153 MA576244:153 LF340668:269 MA576245:269 ENST00000571041.1:291 ENST00000570705.1:314 ENST00000572721.1:-344 LF340662:-475 MA576239:-475 ENST00000572883.1:-478 AK025903:-479
|nearest_unigene=Hs.172772
|nearest_unigene=Hs.172772
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=2768200
|start=2768200

Latest revision as of 12:11, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_179971.1
Species:human
Chr:chr16
Start:2768200
End:2768237
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D2837514,EH38E1796909)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:BC009062:-10
GeneID:23524
HGNC/MGI_ID:HGNC:16639
UniProt_ID:
Nearer transcript ids and distances:
  • LF340665:-44
  • MA576242:-44
  • ENST00000573311.1:-119
  • AL833672:143
  • LF340667:153
  • MA576244:153
  • LF340668:269
  • MA576245:269
  • ENST00000571041.1:291
  • ENST00000570705.1:314
  • ENST00000572721.1:-344
  • LF340662:-475
  • MA576239:-475
  • ENST00000572883.1:-478
  • AK025903:-479
view more...
Gene_name:serine/arginine repetitive matrix 2
Gene_symbol:SRRM2
Gene_synonyms:Cwc21 KIAA0324 SRL300 SRm300
Gene_source:HGNC:16639



TATA-Box annotation

Distance to TSS:9062
Nearest PromoterID:NM_007108
Entrez ID:6923
Nearest Unigene:Hs.172772
Nearest Refseq:NM_007108
Nearest Ensembl:ENSG00000103363
Gene Name:serine/arginine repetitive matrix 2
Gene Alias:SIII|TCEB2
Gene Type:protein-coding
CpG%:0.000000
GC%:0.526316
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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