TSS: Rfhg 184479.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000648729.1:-6 ENST00000565155.2:13 ENST00000569025.1:-416 | |||
|annotation=non-coding (NR_027078, exon 1 of 5) | |annotation=non-coding (NR_027078, exon 1 of 5) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description=uncharacterized LOC283856 | |gene_description=uncharacterized LOC283856 | ||
|gene_id=283856 | |gene_id=283856 | ||
|gene_name= | |gene_name=GNAO1 divergent transcript | ||
|gene_source=EntrezGene:283856 | |gene_source=EntrezGene:283856 | ||
|gene_symbol=GNAO1-DT | |gene_symbol=GNAO1-DT | ||
| Line 21: | Line 22: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000246379 | |nearest_ensembl=ENSG00000246379 | ||
|nearest_promoter_id=NR_027078 | |nearest_promoter_id=NR_027078 | ||
|nearest_refseq=NR_027078 | |nearest_refseq=NR_027078 | ||
|nearest_transcripts=ENST00000565155.2:13 ENST00000569025.1:-416 | |||
|nearest_unigene=Hs.707433 | |nearest_unigene=Hs.707433 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=56189581 | |start=56189581 | ||
Latest revision as of 13:34, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1508 |
|---|---|
| Nearest PromoterID: | NR_027078 |
| Entrez ID: | 283856 |
| Nearest Unigene: | Hs.707433 |
| Nearest Refseq: | NR_027078 |
| Nearest Ensembl: | ENSG00000246379 |
| Gene Name: | GNAO1 divergent transcript |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.272727 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.