TSS: Rfhg 185675.1: Difference between revisions

Latest revision as of 17:01, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_185675.1
Species:	human
Chr:	chr16

Start:	68645057
End:	68645101
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2878074,EH38E1824006)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000429102.6 BC014462
Distance:	-64
GeneID:	1001
HGNC/MGI_ID:	HGNC:1754 HGNC:1762
UniProt_ID:	P22223

Gene_name:	CDH3
Gene_symbol:	CDH15 CDH3
Gene_synonyms:	CDHP PCAD
Gene_source:	HGNC:1754 HGNC:1762

TATA-Box annotation

Distance to TSS:	-231
Nearest PromoterID:	NM_001317195
Entrez ID:	1001
Nearest Unigene:	Hs.191842
Nearest Refseq:	NM_001793
Nearest Ensembl:	ENSG00000062038
Gene Name:	CDH3
Gene Alias:	CDHP\|HJMD\|PCAD
Gene Description:	cadherin 3
Gene Type:	protein-coding
CpG%:	0.022727
GC%:	0.511111
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:1754 HGNC:1762
+|methods=CAGE
 |nearest_ensembl=ENSG00000062038
 |nearest_promoter_id=NM_001317195
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=68645057