TSS: Rfhg 189371.1: Difference between revisions

Latest revision as of 18:10, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_189371.1
Species:	human
Chr:	chr17

Start:	7588025
End:	7588035
Strand:	+

Source datasets

ENCODE

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2906090,EH38E1844532)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	LF326378 MA561955
Distance:	27
GeneID:
HGNC/MGI_ID:
UniProt_ID:

Gene_name:	SOX15
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2064
Nearest PromoterID:	NM_006942
Entrez ID:	6665
Nearest Unigene:	Hs.95582
Nearest Refseq:	NM_006942
Nearest Ensembl:	ENSG00000129194
Gene Name:	SOX15
Gene Alias:	SOX20\|SOX26\|SOX27
Gene Description:	SRY-box transcription factor 15
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.818182
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000129194
 |nearest_promoter_id=NM_006942
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=ENCODE
 |species=human
 |start=7588025