TSS: Rfhg 192267.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000617897.2:9 NM_032965.6:9 ENST00000610751.4:11 U58914:11 Z70292:15 Z70293:15 ENST00000616694.1:-44 BC140941:-44 AF031587:70 KJ897525:70 AB463484:70 NR_027921.3:-461 NR_027922.3:-461
|annotation=promoter-TSS (NM_032965)
|annotation=promoter-TSS (NM_032965)
|ccre_category=PLS
|ccre_category=PLS
Line 15: Line 16:
|gene_description=C-C motif chemokine ligand 15
|gene_description=C-C motif chemokine ligand 15
|gene_id=6359
|gene_id=6359
|gene_name=CCL15
|gene_name=C-C motif chemokine ligand 15
|gene_source=HGNC:10613
|gene_source=HGNC:10613
|gene_symbol=CCL15
|gene_symbol=CCL15
Line 21: Line 22:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:10613
|hgnc_mgi_id=HGNC:10613
|methods=CAGE
|nearest_ensembl=ENSG00000275718
|nearest_ensembl=ENSG00000275718
|nearest_promoter_id=NM_032965
|nearest_promoter_id=NM_032965
|nearest_refseq=NM_004167
|nearest_refseq=NM_004167
|nearest_transcripts=ENST00000610751.4:11 U58914:11 Z70292:15 Z70293:15 ENST00000616694.1:-44 BC140941:-44 AF031587:70 KJ897525:70 AB463484:70 NR_027921.3:-461 NR_027922.3:-461
|nearest_unigene=Hs.272493
|nearest_unigene=Hs.272493
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=36001562
|start=36001562

Latest revision as of 16:02, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_192267.1
Species:human
Chr:chr17
Start:36001562
End:36001577
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2926438,EH38E1858749)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000617897.2:9
GeneID:6359
HGNC/MGI_ID:HGNC:10613
UniProt_ID:Q16663
Nearer transcript ids and distances:
  • ENST00000610751.4:11
  • U58914:11
  • Z70292:15
  • Z70293:15
  • ENST00000616694.1:-44
  • BC140941:-44
  • AF031587:70
  • KJ897525:70
  • AB463484:70
  • NR_027921.3:-461
  • NR_027922.3:-461
view more...
Gene_name:C-C motif chemokine ligand 15
Gene_symbol:CCL15
Gene_synonyms:HCC-2 HMRP-2B Lkn-1 MIP-1d MIP-5 NCC-3 SCYL3
Gene_source:HGNC:10613



TATA-Box annotation

Distance to TSS:-16
Nearest PromoterID:NM_032965
Entrez ID:6359
Nearest Unigene:Hs.272493
Nearest Refseq:NM_004167
Nearest Ensembl:ENSG00000275718
Gene Name:C-C motif chemokine ligand 15
Gene Alias:HCC-2|HMRP-2B|LKN-1|LKN1|MIP-1 delta|MIP-1D|MIP-5|MRP-2B|NCC-3|NCC3|SCYA15|SCYL3|SY15
Gene Type:protein-coding
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_192267.1&oldid=3671846"