TSS: Rfhg 193940.1: Difference between revisions

Latest revision as of 16:33, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_193940.1
Species:	human
Chr:	chr17

Start:	42546005
End:	42546008
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2932781,EH38E1863657)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-6917
Nearest PromoterID:	NM_001330219
Entrez ID:	3292
Nearest Unigene:	Hs.654385
Nearest Refseq:	NM_000413
Nearest Ensembl:	ENSG00000108786
Gene Name:
Gene Alias:	17-beta-HSD\|20-alpha-HSD\|E2DH\|EDH17B2\|EDHB17\|HSD17\|SDR28C1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=hydroxysteroid 17-beta dehydrogenase 1
 |gene_id=
-|gene_name=HSD17B1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000108786
 |nearest_promoter_id=NM_001330219
 |nearest_refseq=NM_000413
+|nearest_transcripts=
 |nearest_unigene=Hs.654385
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=42546005