TSS: Rfhg 194269.1: Difference between revisions

Latest revision as of 16:39, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_194269.1
Species:	human
Chr:	chr17

Start:	44004445
End:	44004445
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2934214,EH38E1864794)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_004160.6:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000360085.6:-24 BC041057:-24 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	24
Nearest PromoterID:	NM_004160
Entrez ID:	5697
Nearest Unigene:	Hs.169249
Nearest Refseq:	NM_004160
Nearest Ensembl:	ENSG00000131096
Gene Name:
Gene Alias:	PYY-I\|PYY1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_004160.6:0 ENST00000360085.6:-24 BC041057:-24
 |annotation=promoter-TSS (NM_004160)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=peptide YY
 |gene_id=
-|gene_name=PYY
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=TSS_database
 |nearest_ensembl=ENSG00000131096
 |nearest_promoter_id=NM_004160
 |nearest_refseq=NM_004160
+|nearest_transcripts=ENST00000360085.6:-24 BC041057:-24
 |nearest_unigene=Hs.169249
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=44004445