TSS: Rfhg 196352.1: Difference between revisions
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AB384975:6 KJ892127:9 CU679661:9 BC010264:-11 AK225711:-63 AB062124:-66 ENST00000581979.5:-71 BC033785:-71 M72709:-71 AB209558:-72 AK298527:-82 AK312781:-82 ENST00000578794.2:-85 ENST00000258962.5:-85 NM_001078166.2:-85 NM_006924.5:-85 NR_034041.2:-85 AK289933:-92 ENST00000582730.6:-100 ENST00000584773.5:-100 ENST00000583741.1:-100 M69040:-100 ENST00000585096.1:-112 ENST00000578430.1:-185 | |||
|annotation=promoter-TSS (NM_001078166) | |annotation=promoter-TSS (NM_001078166) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=serine and arginine rich splicing factor 1 | |gene_description=serine and arginine rich splicing factor 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}NETCAGE | |||
|nearest_ensembl=ENSG00000136450 | |nearest_ensembl=ENSG00000136450 | ||
|nearest_promoter_id=NM_006924 | |nearest_promoter_id=NM_006924 | ||
|nearest_refseq=NM_006924 | |nearest_refseq=NM_006924 | ||
|nearest_transcripts=KJ892127:9 CU679661:9 BC010264:-11 AK225711:-63 AB062124:-66 ENST00000581979.5:-71 BC033785:-71 M72709:-71 AB209558:-72 AK298527:-82 AK312781:-82 ENST00000578794.2:-85 ENST00000258962.5:-85 NM_001078166.2:-85 NM_006924.5:-85 NR_034041.2:-85 AK289933:-92 ENST00000582730.6:-100 ENST00000584773.5:-100 ENST00000583741.1:-100 M69040:-100 ENST00000585096.1:-112 ENST00000578430.1:-185 | |||
|nearest_unigene=Hs.68714 | |nearest_unigene=Hs.68714 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=58007147 | |start=58007147 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=AB384975 | |transcript_name=AB384975 | ||
|tss_cluster_detected=3 | |||
|tss_id=rfhg_196352.1 | |tss_id=rfhg_196352.1 | ||
|tss_id_v3=hg_167175.1 | |tss_id_v3=hg_167175.1 | ||
Latest revision as of 17:21, 14 March 2025
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | FANTOM5|PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|NETCAGE | |||||||||||||||
| TSS cluster detected* | 3 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2946682,EH38E1873825) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 92 |
|---|---|
| Nearest PromoterID: | NM_006924 |
| Entrez ID: | 6426 |
| Nearest Unigene: | Hs.68714 |
| Nearest Refseq: | NM_006924 |
| Nearest Ensembl: | ENSG00000136450 |
| Gene Name: | |
| Gene Alias: | ASF|SF2|SF2p33|SFRS1|SRp30a |
| Gene Type: | protein-coding |
| CpG%: | 0.142857 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "KJ892127:9 CU679661:9 BC010264:-11 AK225711:-63 AB062124:-66 ENST00000581979.5:-71 BC033785:-71 M72709:-71 AB209558:-72 AK298527:-82 AK312781:-82 ENST00000578794.2:-85 ENST00000258962.5:-85 NM_001078166.2:-85 NM_006924.5:-85 NR_034041.2:-85 AK289933:-92 ENST00000582730.6:-100 ENST00000584773.5:-100 ENST00000583741.1:-100 M69040:-100 ENST00000585096.1:-112 ENST00000578430.1:-185" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.