TSS: Rfhg 196820.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=BC048806:-2 ENST00000464714.1:5 BC036356:-5 ENST00000269127.5:-25 NM_181707.3:-25 | |||
|annotation=promoter-TSS (NM_181707) | |annotation=promoter-TSS (NM_181707) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=chromosome 17 open reading frame 64 | |gene_description=chromosome 17 open reading frame 64 | ||
|gene_id=124773 | |gene_id=124773 | ||
|gene_name= | |gene_name=CHD1 helical C-terminal domain containing 1 | ||
|gene_source=HGNC:26990 | |gene_source=HGNC:26990 | ||
|gene_symbol=CHCT1 | |gene_symbol=CHCT1 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26990 | |hgnc_mgi_id=HGNC:26990 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl=ENSG00000141371 | |nearest_ensembl=ENSG00000141371 | ||
|nearest_promoter_id=NM_181707 | |nearest_promoter_id=NM_181707 | ||
|nearest_refseq=NM_181707 | |nearest_refseq=NM_181707 | ||
|nearest_transcripts=ENST00000464714.1:5 BC036356:-5 ENST00000269127.5:-25 NM_181707.3:-25 | |||
|nearest_unigene=Hs.129312 | |nearest_unigene=Hs.129312 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start=60422514 | |start=60422514 | ||
Latest revision as of 17:30, 14 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2948774,EH38E1875455) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_181707 |
| Entrez ID: | 124773 |
| Nearest Unigene: | Hs.129312 |
| Nearest Refseq: | NM_181707 |
| Nearest Ensembl: | ENSG00000141371 |
| Gene Name: | CHD1 helical C-terminal domain containing 1 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.529412 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.