TSS: Rfhg 206479.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:55312 | |hgnc_mgi_id=HGNC:55312 | ||
|methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}STRIPE-seq{{!}}SLIC_CAGE | |||
|nearest_ensembl=ENSG00000266983 | |nearest_ensembl=ENSG00000266983 | ||
|nearest_promoter_id=NR_046376 | |nearest_promoter_id=NR_046376 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA597322{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start=5978356 | |start=5978356 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000587836.1 | |transcript_name=ENST00000587836.1 | ||
|tss_cluster_detected= | |tss_cluster_detected=5 | ||
|tss_id=rfhg_206479.1 | |tss_id=rfhg_206479.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 23:29, 7 December 2023
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA597322|PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|oligo_capping|STRIPE-seq|SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 5 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3037187,EH38E1935456) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NR_046376 |
| Entrez ID: | 100128568 |
| Nearest Unigene: | Hs.624525 |
| Nearest Refseq: | NR_046376 |
| Nearest Ensembl: | ENSG00000266983 |
| Gene Name: | LOC100128568 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128568 |
| Gene Type: | ncRNA |
| CpG%: | 0.095238 |
| GC%: | 0.604651 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.