TSS: Rfhg 210127.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000418100.6:0 ENST00000597537.1:0 ENST00000597037.1:0 NM_001355406.2:0 NM_001355405.2:0 NM_001355404.2:0 AK301230:0 | |||
|annotation=promoter-TSS (NM_001355406) | |annotation=promoter-TSS (NM_001355406) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=zinc finger protein 724 | |gene_description=zinc finger protein 724 | ||
|gene_id=440519 | |gene_id=440519 | ||
|gene_name= | |gene_name=zinc finger protein 724 | ||
|gene_source=HGNC:32460 | |gene_source=HGNC:32460 | ||
|gene_symbol=ZNF724 | |gene_symbol=ZNF724 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:32460 | |hgnc_mgi_id=HGNC:32460 | ||
|methods=CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE | |||
|nearest_ensembl=ENSG00000196081 | |nearest_ensembl=ENSG00000196081 | ||
|nearest_promoter_id=NM_001355404 | |nearest_promoter_id=NM_001355404 | ||
|nearest_refseq=NM_001355404 | |nearest_refseq=NM_001355404 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.675814 | |nearest_unigene=Hs.675814 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=23250343 | |start=23250343 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000418100.6 ENST00000597537.1 ENST00000597037.1 AK301230 | |transcript_name=ENST00000418100.6 ENST00000597537.1 ENST00000597037.1 AK301230 | ||
|tss_cluster_detected= | |tss_cluster_detected=6 | ||
|tss_id=rfhg_210127.1 | |tss_id=rfhg_210127.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A8MTY0 M0R0Z7 M0R3J2 | |uniprot_id=A8MTY0 M0R0Z7 M0R3J2 | ||
}} | }} | ||
Latest revision as of 21:43, 14 March 2025
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA548673|PRJNA615891|PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|ReCappable-seq|SLIC_CAGE|NETCAGE | |||||||||||||
| TSS cluster detected* | 6 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3051056,EH38E1946408) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_001355404 |
| Entrez ID: | 440519 |
| Nearest Unigene: | Hs.675814 |
| Nearest Refseq: | NM_001355404 |
| Nearest Ensembl: | ENSG00000196081 |
| Gene Name: | zinc finger protein 724 |
| Gene Alias: | ZNF724P |
| Gene Type: | protein-coding |
| CpG%: | 0.067797 |
| GC%: | 0.616667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.