TSS: Rfhg 210301.1: Difference between revisions

Latest revision as of 21:45, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_210301.1
TSS ID(Version3):	hg_174970.1
Species:	human
Chr:	chr19

Start:	27793443
End:	27793503
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3051855,EH38E1946954)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC024732:0
GeneID:	101927151
HGNC/MGI_ID:	HGNC:56093
UniProt_ID:
Nearer transcript ids and distances:	ENST00000585917.6:-12 ENST00000666789.1:-12 NR_110689.2:-12 NR_110691.2:-12 NR_110688.2:-12 NR_146735.1:-12 NR_146734.1:-12 NR_146733.1:-12 ENST00000669503.1:392 NR_110690.1:392 NR_110687.1:392 NR_146736.1:392 ENST00000668186.1:465 ENST00000669909.1:498 view more...

Gene_name:	long intergenic non-protein coding RNA 2987
Gene_symbol:	LINC02987
Gene_synonyms:
Gene_source:	HGNC:56093

TATA-Box annotation

Distance to TSS:	42
Nearest PromoterID:	NR_110691
Entrez ID:	101927151
Nearest Unigene:	Hs.567934
Nearest Refseq:	NR_110687
Nearest Ensembl:	ENSG00000267575
Gene Name:	long intergenic non-protein coding RNA 2987
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.050000
GC%:	0.622951
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000653426.1:0 ENST00000667196.1:0 ENST00000655543.1:0 ENST00000670399.1:0 ENST00000592404.6:0 ENST00000668414.1:0 ENST00000659857.1:0 ENST00000667566.1:0 ENST00000588122.5:0 ENST00000656827.1:0 ENST00000586784.1:0 ENST00000592806.1:0 ENST00000590628.1:0 ENST00000588318.1:0 BC024732:0 ENST00000585917.6:-12 ENST00000666789.1:-12 NR_110689.2:-12 NR_110691.2:-12 NR_110688.2:-12 NR_146735.1:-12 NR_146734.1:-12 NR_146733.1:-12 ENST00000669503.1:392 NR_110690.1:392 NR_110687.1:392 NR_146736.1:392 ENST00000668186.1:465 ENST00000669909.1:498
 |annotation=promoter-TSS (NR_110688)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC101927151
 |gene_id=101927151
-|gene_name=LOC101927151
+|gene_name=long intergenic non-protein coding RNA 2987
 |gene_source=HGNC:56093
 |gene_symbol=LINC02987
@@ Line 21: / Line 22: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:56093
+|methods=CAGE{{!}}NETCAGE{{!}}C1CAGE{{!}}oligo_capping{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000267575
 |nearest_promoter_id=NR_110691
 |nearest_refseq=NR_110687
+|nearest_transcripts=ENST00000585917.6:-12 ENST00000666789.1:-12 NR_110689.2:-12 NR_110691.2:-12 NR_110688.2:-12 NR_146735.1:-12 NR_146734.1:-12 NR_146733.1:-12 ENST00000669503.1:392 NR_110690.1:392 NR_110687.1:392 NR_146736.1:392 ENST00000668186.1:465 ENST00000669909.1:498
 |nearest_unigene=Hs.567934
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891
 |species=human
 |start=27793443
@@ Line 32: / Line 36: @@
 |tata_box=
 |transcript_name=BC024732
+|tss_cluster_detected=11
 |tss_id=rfhg_210301.1
 |tss_id_v3=hg_174970.1