TSS: Rfhg 210565.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000592982.2:0 NR_026887.2:0 BC027959:14 AK022417:101 BC113872:213 BC114482:213 | |||
|annotation=promoter-TSS (NM_001287424) | |annotation=promoter-TSS (NM_001287424) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=CEBPA divergent transcript | |gene_description=CEBPA divergent transcript | ||
|gene_id=80054 | |gene_id=80054 | ||
|gene_name=CEBPA | |gene_name=CEBPA divergent transcript | ||
|gene_source=HGNC:25710 | |gene_source=HGNC:25710 | ||
|gene_symbol=CEBPA-DT | |gene_symbol=CEBPA-DT | ||
| Line 21: | Line 22: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:25710 | |hgnc_mgi_id=HGNC:25710 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000267296 | |nearest_ensembl=ENSG00000267296 | ||
|nearest_promoter_id=NR_026887 | |nearest_promoter_id=NR_026887 | ||
|nearest_refseq=NR_026887 | |nearest_refseq=NR_026887 | ||
|nearest_transcripts=BC027959:14 AK022417:101 BC113872:213 BC114482:213 | |||
|nearest_unigene=Hs.287521 | |nearest_unigene=Hs.287521 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=33302806 | |start=33302806 | ||
Latest revision as of 21:50, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3056247,EH38E1949613) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NR_026887 |
| Entrez ID: | 80054 |
| Nearest Unigene: | Hs.287521 |
| Nearest Refseq: | NR_026887 |
| Nearest Ensembl: | ENSG00000267296 |
| Gene Name: | CEBPA divergent transcript |
| Gene Alias: | CEBPA-AS1 |
| Gene Type: | ncRNA |
| CpG%: | 0.078431 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.