TSS: Rfhg 213504.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF366971:-95 MA602548:-95 BX538117:260 CR542101:-359 AB463627:-359 EU832190:-359 EU832097:-359 | |||
|annotation=intron (NM_001114171, intron 1 of 2) | |annotation=intron (NM_001114171, intron 1 of 2) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=FosB proto-oncogene, AP-1 transcription factor subunit | |gene_description=FosB proto-oncogene, AP-1 transcription factor subunit | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000125740 | |nearest_ensembl=ENSG00000125740 | ||
|nearest_promoter_id=NM_006732 | |nearest_promoter_id=NM_006732 | ||
|nearest_refseq=NM_006732 | |nearest_refseq=NM_006732 | ||
|nearest_transcripts=BX538117:260 CR542101:-359 AB463627:-359 EU832190:-359 EU832097:-359 | |||
|nearest_unigene=Hs.590958 | |nearest_unigene=Hs.590958 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=45468946 | |start=45468946 | ||
Latest revision as of 22:47, 14 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3066235,EH38E1957493) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 961 |
|---|---|
| Nearest PromoterID: | NM_006732 |
| Entrez ID: | 2354 |
| Nearest Unigene: | Hs.590958 |
| Nearest Refseq: | NM_006732 |
| Nearest Ensembl: | ENSG00000125740 |
| Gene Name: | |
| Gene Alias: | AP-1|G0S3|GOS3|GOSB |
| Gene Type: | protein-coding |
| CpG%: | 0.045455 |
| GC%: | 0.695652 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |