TSS: Rfhg 214495.1: Difference between revisions

Latest revision as of 23:07, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_214495.1
Species:	human
Chr:	chr19

Start:	48874537
End:	48874641
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3069743,EH38E1960379)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF367878:2 MA603455:2
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF367877:131 MA603454:131 LF367879:272 MA603456:272 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2197
Nearest PromoterID:	NM_014330
Entrez ID:	23645
Nearest Unigene:	Hs.631593
Nearest Refseq:	NM_014330
Nearest Ensembl:	ENSG00000087074
Gene Name:
Gene Alias:	GADD34
Gene Type:	protein-coding
CpG%:	0.009615
GC%:	0.533333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF367878:2 MA603455:2 LF367877:131 MA603454:131 LF367879:272 MA603456:272
 |annotation=exon (NM_014330, exon 2 of 3)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=protein phosphatase 1 regulatory subunit 15A
 |gene_id=
-|gene_name=PPP1R15A
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000087074
 |nearest_promoter_id=NM_014330
 |nearest_refseq=NM_014330
+|nearest_transcripts=LF367877:131 MA603454:131 LF367879:272 MA603456:272
 |nearest_unigene=Hs.631593
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=48874537