TSS: Rfhg 217996.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001377134.2:0 ENST00000407043.6:23 ENST00000441846.5:67 AK307837:314 ENST00000378473.9:347 NM_001377136.1:347 NM_001377135.1:347 NM_001172646.2:347 NM_001377143.1:347 NM_182797.3:347 NM_000933.4:347 NM_001377142.1:347 ENST00000437503.5:361 AK307482:405 | |||
|annotation=promoter-TSS (NM_001172646) | |annotation=promoter-TSS (NM_001172646) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
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|gene_description=phospholipase C beta 4 | |gene_description=phospholipase C beta 4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=NETCAGE{{!}}CAGE{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000101333 | |nearest_ensembl=ENSG00000101333 | ||
|nearest_promoter_id=NM_001172646 | |nearest_promoter_id=NM_001172646 | ||
|nearest_refseq=NM_000933 | |nearest_refseq=NM_000933 | ||
|nearest_transcripts=ENST00000407043.6:23 ENST00000441846.5:67 AK307837:314 ENST00000378473.9:347 NM_001377136.1:347 NM_001377135.1:347 NM_001172646.2:347 NM_001377143.1:347 NM_182797.3:347 NM_000933.4:347 NM_001377142.1:347 ENST00000437503.5:361 AK307482:405 | |||
|nearest_unigene=Hs.472101 | |nearest_unigene=Hs.472101 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=9068657 | |start=9068657 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=NM_001377134.2 | |transcript_name=NM_001377134.2 | ||
|tss_cluster_detected= | |tss_cluster_detected=4 | ||
|tss_id=rfhg_217996.1 | |tss_id=rfhg_217996.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 00:12, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE|ReCappable-seq | |||||||||||||
| TSS cluster detected* | 4 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3276223,EH38E2096649) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -356 |
|---|---|
| Nearest PromoterID: | NM_001172646 |
| Entrez ID: | 5332 |
| Nearest Unigene: | Hs.472101 |
| Nearest Refseq: | NM_000933 |
| Nearest Ensembl: | ENSG00000101333 |
| Gene Name: | |
| Gene Alias: | ARCND2|PI-PLC |
| Gene Type: | protein-coding |
| CpG%: | 0.096386 |
| GC%: | 0.726190 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |