TSS: Hg 121987.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=0 |entrez_id=4317 |gc_percent=0.467662 |gene_alias=CLG1|HNC|MMP-8|PMNL-CL |gene_description=matrix metallopeptidase 8 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
|HNC= | |||
|MMP-8= | |||
|PMNL-CL= | |||
|all_trans=HGNC:7175 | |||
|chr=chr11 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |||
|distance_to_tss=0 | |distance_to_tss=0 | ||
|end=102724957 | |||
|end_of_center_position=102724954 | |||
|entrez_id=4317 | |entrez_id=4317 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=CLG1 | |gene_alias=CLG1{{!}}HNC{{!}}MMP-8{{!}}PMNL-CL | ||
|gene_description=matrix metallopeptidase 8 | |gene_description=matrix metallopeptidase 8 | ||
|gene_name=MMP8 | |gene_id=4317 | ||
|gene_name=matrix metallopeptidase 8 | |||
|gene_source=HGNC:7175 | |||
|gene_symbol=MMP8 | |||
|gene_synonyms= | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:7175 | |||
|nearest_ensembl=ENSG00000118113 | |nearest_ensembl=ENSG00000118113 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_002424 | ||
|nearest_refseq=NM_002424 | |nearest_refseq=NM_002424 | ||
|nearest_unigene=Hs.161839 | |nearest_unigene=Hs.161839 | ||
|tata_box= | |num_trans=4317 | ||
|species=human | |||
|start=102724950 | |||
|start_of_center_position=102724953 | |||
|strand=- | |||
|tata_box=-33(GGCTTTAAAGAG,-,0.00) | |||
|transcript_name=ENST00000236826.8 ENST00000531168.1 ENST00000532799.1 AK292659 AK303388 AK303511 AK313374 | |||
|tss_classification=no | |||
|tss_id=hg_121987.1 | |tss_id=hg_121987.1 | ||
|tss_score=1 | |||
|uniprot_id=A8K9E4 B4E0I2 B4E0T0 E9PIY7 E9PJB3 P22894 | |||
}} | }} | ||
Latest revision as of 01:32, 20 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
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| Nearest PromoterID: | NM_002424 |
| Entrez ID: | 4317 |
| Nearest Unigene: | Hs.161839 |
| Nearest Refseq: | NM_002424 |
| Nearest Ensembl: | ENSG00000118113 |
| Gene Name: | matrix metallopeptidase 8 |
| Gene Alias: | CLG1|HNC|MMP-8|PMNL-CL |
| Gene Description: | matrix metallopeptidase 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GGCTTTAAAGAG,-,0.00) |
TSS expression
Expression data not found.