TSS: Rfhg 2411.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:24018 | |hgnc_mgi_id=HGNC:24018 | ||
|methods=TIF-seq2 | |||
|nearest_ensembl=ENSG00000117148 | |nearest_ensembl=ENSG00000117148 | ||
|nearest_promoter_id=NM_030812 | |nearest_promoter_id=NM_030812 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA615891 | |||
|species=human | |species=human | ||
|start=17755310 | |start=17755310 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000375406.2 AK057339 BC028909 | |transcript_name=ENST00000375406.2 AK057339 BC028909 | ||
|tss_cluster_detected= | |tss_cluster_detected=1 | ||
|tss_id=rfhg_2411.1 | |tss_id=rfhg_2411.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q9H568 | |uniprot_id=Q9H568 | ||
}} | }} |
Latest revision as of 09:46, 8 December 2023
Basic information about the TSS
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Source datasets | PRJNA615891 | |||||||||||||
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Protocol | TIF-seq2 | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D2132907,EH38E1323456) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 16 |
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Nearest PromoterID: | NM_030812 |
Entrez ID: | 81569 |
Nearest Unigene: | Hs.2149 |
Nearest Refseq: | NM_030812 |
Nearest Ensembl: | ENSG00000117148 |
Gene Name: | ACTL8 |
Gene Alias: | CT57 |
Gene Description: | actin like 8 |
Gene Type: | protein-coding |
CpG%: | 0.089744 |
GC%: | 0.645570 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.