TSS: Rfhg 2532.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000235835.8:0 ENST00000330072.9:0 ENST00000492217.1:0 NM_001320979.1:0 NM_003689.4:0 LF206692:0 MA442269:0 BC004111:0 BC011586:0 BC013996:0 AF026947:0 AK225267:0 BC007352:0 BC012171:0 EU794591:0 Y16675:0 BC010852:0 AK303131:0 AK310609:0 KJ901887:27 DQ891003:30 DQ894182:30 BT007347:32 ENST00000489286.5:162 LY501480:-296 MA780368:-296 | |||
|annotation=promoter-TSS (NR_109848) | |annotation=promoter-TSS (NR_109848) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=aldo-keto reductase family 7 member A2 | |gene_description=aldo-keto reductase family 7 member A2 | ||
|gene_id=8574 | |gene_id=8574 | ||
|gene_name= | |gene_name=aldo-keto reductase family 7 member A2 | ||
|gene_source=HGNC:389 | |gene_source=HGNC:389 | ||
|gene_symbol=AKR7A2 | |gene_symbol=AKR7A2 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:389 | |hgnc_mgi_id=HGNC:389 | ||
|methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000053371 | |nearest_ensembl=ENSG00000053371 | ||
|nearest_promoter_id=NM_003689 | |nearest_promoter_id=NM_003689 | ||
|nearest_refseq=NM_003689 | |nearest_refseq=NM_003689 | ||
|nearest_transcripts=KJ901887:27 DQ891003:30 DQ894182:30 BT007347:32 ENST00000489286.5:162 LY501480:-296 MA780368:-296 | |||
|nearest_unigene=Hs.571886 | |nearest_unigene=Hs.571886 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=19312069 | |start=19312069 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000235835.8 ENST00000330072.9 ENST00000492217.1 BC004111 BC011586 BC013996 AF026947 AK225267 BC007352 BC012171 EU794591 Y16675 BC010852 AK303131 AK310609 | |transcript_name=ENST00000235835.8 ENST00000330072.9 ENST00000492217.1 BC004111 BC011586 BC013996 AF026947 AK225267 BC007352 BC012171 EU794591 Y16675 BC010852 AK303131 AK310609 | ||
|tss_cluster_detected=9 | |||
|tss_id=rfhg_2532.1 | |tss_id=rfhg_2532.1 | ||
|tss_id_v3=hg_10654.1 | |tss_id_v3=hg_10654.1 | ||
Latest revision as of 07:27, 15 March 2025
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | FANTOM5|EPD|PRJNA4843412|DRA013844|PRJNA615891|PRJNA401781 |PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|NETCAGE|TIF-seq2|SLIC_CAGE|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 9 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2134415,EH38E1324469) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_003689 |
| Entrez ID: | 8574 |
| Nearest Unigene: | Hs.571886 |
| Nearest Refseq: | NM_003689 |
| Nearest Ensembl: | ENSG00000053371 |
| Gene Name: | aldo-keto reductase family 7 member A2 |
| Gene Alias: | AFAR|AFAR1|AFB1-AR1|AKR7 |
| Gene Type: | protein-coding |
| CpG%: | 0.187500 |
| GC%: | 0.728395 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.