TSS: Rfhg 31472.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000263707.6:0 NM_014553.3:0 BC064698:0 AL137740:0 AF198488:0 | |||
|annotation=promoter-TSS (NM_014553) | |annotation=promoter-TSS (NM_014553) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=transcription factor CP2 like 1 | |gene_description=transcription factor CP2 like 1 | ||
|gene_id=29842 | |gene_id=29842 | ||
|gene_name= | |gene_name=transcription factor CP2 like 1 | ||
|gene_source=HGNC:17925 | |gene_source=HGNC:17925 | ||
|gene_symbol=TFCP2L1 | |gene_symbol=TFCP2L1 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17925 | |hgnc_mgi_id=HGNC:17925 | ||
|methods=C1CAGE | |||
|nearest_ensembl=ENSG00000115112 | |nearest_ensembl=ENSG00000115112 | ||
|nearest_promoter_id=NM_014553 | |nearest_promoter_id=NM_014553 | ||
|nearest_refseq=NM_014553 | |nearest_refseq=NM_014553 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.156471 | |nearest_unigene=Hs.156471 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB5282 | |||
|species=human | |species=human | ||
|start=121285195 | |start=121285195 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000263707.6 BC064698 AL137740 AF198488 | |transcript_name=ENST00000263707.6 BC064698 AL137740 AF198488 | ||
|tss_cluster_detected= | |tss_cluster_detected=1 | ||
|tss_id=rfhg_31472.1 | |tss_id=rfhg_31472.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5JV87 Q9NZI6 | |uniprot_id=Q5JV87 Q9NZI6 | ||
}} | }} | ||
Latest revision as of 09:18, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJDB5282 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3171799,EH38E2029218) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_014553 |
| Entrez ID: | 29842 |
| Nearest Unigene: | Hs.156471 |
| Nearest Refseq: | NM_014553 |
| Nearest Ensembl: | ENSG00000115112 |
| Gene Name: | transcription factor CP2 like 1 |
| Gene Alias: | CRTR1|LBP-9|LBP9 |
| Gene Type: | protein-coding |
| CpG%: | 0.214286 |
| GC%: | 0.800000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.