TSS: Rfhg 35287.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000375129.8:-10 ENST00000645762.1:19 ENST00000437056.5:-26 BC020859:-26 NM_001369912.1:-38 BC127902:101 BC127903:101 KJ896304:133 KR711949:133 KR711950:133 KR711951:133 KR711952:133 ENST00000442710.5:291
|annotation=promoter-TSS (NM_001369912)
|annotation=promoter-TSS (NM_001369912)
|ccre_category=N
|ccre_category=N
Line 15: Line 16:
|gene_description=pejvakin
|gene_description=pejvakin
|gene_id=494513
|gene_id=494513
|gene_name=PJVK
|gene_name=pejvakin
|gene_source=HGNC:29502
|gene_source=HGNC:29502
|gene_symbol=PJVK
|gene_symbol=PJVK
Line 21: Line 22:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:29502
|hgnc_mgi_id=HGNC:29502
|methods=TSS_database
|nearest_ensembl=ENSG00000204311
|nearest_ensembl=ENSG00000204311
|nearest_promoter_id=NM_001369912
|nearest_promoter_id=NM_001369912
|nearest_refseq=NM_001042702
|nearest_refseq=NM_001042702
|nearest_transcripts=ENST00000645762.1:19 ENST00000437056.5:-26 BC020859:-26 NM_001369912.1:-38 BC127902:101 BC127903:101 KJ896304:133 KR711949:133 KR711950:133 KR711951:133 KR711952:133 ENST00000442710.5:291
|nearest_unigene=Hs.87734
|nearest_unigene=Hs.87734
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=EPD
|species=human
|species=human
|start=178453277
|start=178453277

Latest revision as of 10:29, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_35287.1
Species:human
Chr:chr2
Start:178453277
End:178453277
Strand:+
Source datasetsEPD
ProtocolTSS_database
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000375129.8:-10
GeneID:494513
HGNC/MGI_ID:HGNC:29502
UniProt_ID:Q0ZLH3
Nearer transcript ids and distances:
  • ENST00000645762.1:19
  • ENST00000437056.5:-26
  • BC020859:-26
  • NM_001369912.1:-38
  • BC127902:101
  • BC127903:101
  • KJ896304:133
  • KR711949:133
  • KR711950:133
  • KR711951:133
  • KR711952:133
  • ENST00000442710.5:291
view more...
Gene_name:pejvakin
Gene_symbol:PJVK
Gene_synonyms:
Gene_source:HGNC:29502



TATA-Box annotation

Distance to TSS:38
Nearest PromoterID:NM_001369912
Entrez ID:494513
Nearest Unigene:Hs.87734
Nearest Refseq:NM_001042702
Nearest Ensembl:ENSG00000204311
Gene Name:pejvakin
Gene Alias:DFNB59
Gene Type:protein-coding
CpG%:0.000000
GC%:1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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