TSS: Rfhg 3771.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=MA874445:0 LY596857:0 MA874446:1 LY596858:1 MA874447:2 LY596859:2 MA874448:14 LY596860:14 MA874444:-21 LY596856:-21 MA874449:21 LY596861:21 MA874443:-22 LY596855:-22 MA874442:-23 LY596854:-23 MA874441:-24 LY596853:-24 MA874440:-43 LY596852:-43 MA874439:-44 LY596851:-44 MA874438:-45 LY596850:-45 MA874437:-57 LY596849:-57 MA874436:-58 LY596848:-58 MA874435:-59 LY596847:-59 MA874434:-60 LY596846:-60 MA874433:-61 LY596845:-61 MA874432:-77 LY596844:-77 MA874431:-78 LY596843:-78 MA874430:-79 LY596842:-79 MA874429:-80 LY596841:-80 MA874428:-91 LY596840:-91 MA874427:-108 LY596839:-108 MA874426:-129 LY596838:-129 MA874425:-130 LY596837:-130 MA874424:-131 LY596836:-131 MA874423:-134 LY596835:-134 MA874422:-135 LY596834:-135 MA874421:-214 LY596833:-214 MA874420:-251 LY596832:-251 MA874419:-271 LY596831:-271 MA874418:-274 LY596830:-274 MA874417:-328 LY596829:-328 MA874416:-337 LY596828:-337
|annotation=TTS (NM_001803)
|annotation=TTS (NM_001803)
|ccre_category=dELS
|ccre_category=dELS
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|gene_description=UBX domain protein 11
|gene_description=UBX domain protein 11
|gene_id=
|gene_id=
|gene_name=UBXN11
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
Line 21: Line 22:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|methods=CAGE
|nearest_ensembl=ENSG00000158062
|nearest_ensembl=ENSG00000158062
|nearest_promoter_id=NM_145345
|nearest_promoter_id=NM_145345
|nearest_refseq=NM_145345
|nearest_refseq=NM_145345
|nearest_transcripts=MA874446:1 LY596858:1 MA874447:2 LY596859:2 MA874448:14 LY596860:14 MA874444:-21 LY596856:-21 MA874449:21 LY596861:21 MA874443:-22 LY596855:-22 MA874442:-23 LY596854:-23 MA874441:-24 LY596853:-24 MA874440:-43 LY596852:-43 MA874439:-44 LY596851:-44 MA874438:-45 LY596850:-45 MA874437:-57 LY596849:-57 MA874436:-58 LY596848:-58 MA874435:-59 LY596847:-59 MA874434:-60 LY596846:-60 MA874433:-61 LY596845:-61 MA874432:-77 LY596844:-77 MA874431:-78 LY596843:-78 MA874430:-79 LY596842:-79 MA874429:-80 LY596841:-80 MA874428:-91 LY596840:-91 MA874427:-108 LY596839:-108 MA874426:-129 LY596838:-129 MA874425:-130 LY596837:-130 MA874424:-131 LY596836:-131 MA874423:-134 LY596835:-134 MA874422:-135 LY596834:-135 MA874421:-214 LY596833:-214 MA874420:-251 LY596832:-251 MA874419:-271 LY596831:-271 MA874418:-274 LY596830:-274 MA874417:-328 LY596829:-328 MA874416:-337 LY596828:-337
|nearest_unigene=Hs.145061
|nearest_unigene=Hs.145061
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=26320491
|start=26320491

Latest revision as of 11:15, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_3771.1
Species:human
Chr:chr1
Start:26320491
End:26320500
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS (EH38D2141849,EH38E1330417)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:MA874445:0
LY596857:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • MA874446:1
  • LY596858:1
  • MA874447:2
  • LY596859:2
  • MA874448:14
  • LY596860:14
  • MA874444:-21
  • LY596856:-21
  • MA874449:21
  • LY596861:21
  • MA874443:-22
  • LY596855:-22
  • MA874442:-23
  • LY596854:-23
  • MA874441:-24
  • LY596853:-24
  • MA874440:-43
  • LY596852:-43
  • MA874439:-44
  • LY596851:-44
  • MA874438:-45
  • LY596850:-45
  • MA874437:-57
  • LY596849:-57
  • MA874436:-58
  • LY596848:-58
  • MA874435:-59
  • LY596847:-59
  • MA874434:-60
  • LY596846:-60
  • MA874433:-61
  • LY596845:-61
  • MA874432:-77
  • LY596844:-77
  • MA874431:-78
  • LY596843:-78
  • MA874430:-79
  • LY596842:-79
  • MA874429:-80
  • LY596841:-80
  • MA874428:-91
  • LY596840:-91
  • MA874427:-108
  • LY596839:-108
  • MA874426:-129
  • LY596838:-129
  • MA874425:-130
  • LY596837:-130
  • MA874424:-131
  • LY596836:-131
  • MA874423:-134
  • LY596835:-134
  • MA874422:-135
  • LY596834:-135
  • MA874421:-214
  • LY596833:-214
  • MA874420:-251
  • LY596832:-251
  • MA874419:-271
  • LY596831:-271
  • MA874418:-274
  • LY596830:-274
  • MA874417:-328
  • LY596829:-328
  • MA874416:-337
  • LY596828:-337
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-2230
Nearest PromoterID:NM_145345
Entrez ID:91544
Nearest Unigene:Hs.145061
Nearest Refseq:NM_145345
Nearest Ensembl:ENSG00000158062
Gene Name:
Gene Alias:COA-1|PP2243|SOC|SOCI|UBXD5
Gene Type:protein-coding
CpG%:0.000000
GC%:0.700000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "MA874446:1 LY596858:1 MA874447:2 LY596859:2 MA874448:14 LY596860:14 MA874444:-21 LY596856:-21 MA874449:21 LY596861:21 MA874443:-22 LY596855:-22 MA874442:-23 LY596854:-23 MA874441:-24 LY596853:-24 MA874440:-43 LY596852:-43 MA874439:-44 LY596851:-44 MA874438:-45 LY596850:-45 MA874437:-57 LY596849:-57 MA874436:-58 LY596848:-58 MA874435:-59 LY596847:-59 MA874434:-60 LY596846:-60 MA874433:-61 LY596845:-61 MA874432:-77 LY596844:-77 MA874431:-78 LY596843:-78 MA874430:-79 LY596842:-79 MA874429:-80 LY596841:-80 MA874428:-91 LY596840:-91 MA874427:-108 LY596839:-108 MA874426:-129 LY596838:-129 MA874425:-130 LY596837:-130 MA874424:-131 LY596836:-131 MA874423:-134 LY596835:-134 MA874422:-135 LY596834:-135 MA874421:-214 LY596833:-214 MA874420:-251 LY596832:-251 MA874419:-271 LY596831:-271 MA874418:-274 LY596830:-274 MA874417:-328 LY596829:-328 MA874416:-337 LY596828:-337" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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