TSS: Rfhg 43442.1: Difference between revisions
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF208658:0 MA444235:0 LP895461:0 ENST00000420543.6:29 AK025592:105 ENST00000463512.5:107 BC001139:107 BC001853:107 ENST00000414162.5:155 AK290637:233 ENST00000479665.6:255 NM_001271650.2:255 NM_022461.5:255 NM_001134432.2:255 NM_001134433.2:255 ENST00000457172.5:260 AK123678:284 ENST00000295748.7:289 BX648471:289 ENST00000334100.10:450 | |||
|annotation=promoter-TSS (NM_001134433) | |annotation=promoter-TSS (NM_001134433) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=zinc finger CW-type and PWWP domain containing 2 | |gene_description=zinc finger CW-type and PWWP domain containing 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000206559 | |nearest_ensembl=ENSG00000206559 | ||
|nearest_promoter_id=NM_001324170 | |nearest_promoter_id=NM_001324170 | ||
|nearest_refseq=NM_001040432 | |nearest_refseq=NM_001040432 | ||
|nearest_transcripts=ENST00000420543.6:29 AK025592:105 ENST00000463512.5:107 BC001139:107 BC001853:107 ENST00000414162.5:155 AK290637:233 ENST00000479665.6:255 NM_001271650.2:255 NM_022461.5:255 NM_001134432.2:255 NM_001134433.2:255 ENST00000457172.5:260 AK123678:284 ENST00000295748.7:289 BX648471:289 ENST00000334100.10:450 | |||
|nearest_unigene=Hs.510635 | |nearest_unigene=Hs.510635 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=28349079 | |start=28349079 | ||
Latest revision as of 13:02, 15 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3407125,EH38E2187646) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -65 |
|---|---|
| Nearest PromoterID: | NM_001324170 |
| Entrez ID: | 152098 |
| Nearest Unigene: | Hs.510635 |
| Nearest Refseq: | NM_001040432 |
| Nearest Ensembl: | ENSG00000206559 |
| Gene Name: | |
| Gene Alias: | ZCW2 |
| Gene Type: | protein-coding |
| CpG%: | 0.200000 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000420543.6:29 AK025592:105 ENST00000463512.5:107 BC001139:107 BC001853:107 ENST00000414162.5:155 AK290637:233 ENST00000479665.6:255 NM_001271650.2:255 NM_022461.5:255 NM_001134432.2:255 NM_001134433.2:255 ENST00000457172.5:260 AK123678:284 ENST00000295748.7:289 BX648471:289 ENST00000334100.10:450" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.