TSS: Rfhg 45672.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:34426 | |hgnc_mgi_id=HGNC:34426 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_027331 | |nearest_promoter_id=NR_027331 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start=52065082 | |start=52065082 |
Latest revision as of 16:19, 8 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|EPD | |||||||||||||
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Protocol | CAGE|TSS_database | |||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | - |
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Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 12 |
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Nearest PromoterID: | NR_027331 |
Entrez ID: | 100128378 |
Nearest Unigene: | Hs.640106 |
Nearest Refseq: | NM_001123039 |
Nearest Ensembl: | |
Gene Name: | LINC00696 |
Gene Alias: | C3orf74 |
Gene Description: | long intergenic non-protein coding RNA 696 |
Gene Type: | ncRNA |
CpG%: | 0.000000 |
GC%: | 0.432432 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.