TSS: Rfhg 46630.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001377406.1:0 ENST00000487717.5:-138 ENST00000522345.2:467 BC166666:478 | |||
|annotation=promoter-TSS (NR_148359) | |annotation=promoter-TSS (NR_148359) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=SCA7/ATXN7 antisense RNA 1 | |gene_description=SCA7/ATXN7 antisense RNA 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=NETCAGE{{!}}CAGE | |||
|nearest_ensembl=ENSG00000280620 | |nearest_ensembl=ENSG00000280620 | ||
|nearest_promoter_id=NR_148359 | |nearest_promoter_id=NR_148359 | ||
|nearest_refseq=NR_148359 | |nearest_refseq=NR_148359 | ||
|nearest_transcripts=ENST00000487717.5:-138 ENST00000522345.2:467 BC166666:478 | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=63912067 | |start=63912067 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=NM_001377406.1 | |transcript_name=NM_001377406.1 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_46630.1 | |tss_id=rfhg_46630.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 14:02, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3438253,EH38E2209035) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -322 |
|---|---|
| Nearest PromoterID: | NR_148359 |
| Entrez ID: | 100861563 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_148359 |
| Nearest Ensembl: | ENSG00000280620 |
| Gene Name: | |
| Gene Alias: | ATXN7-AS1 |
| Gene Type: | ncRNA |
| CpG%: | 0.185185 |
| GC%: | 0.781818 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |