TSS: Rfhg 47406.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=promoter-TSS (NM_001256505) | |annotation=promoter-TSS (NM_001256505) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 15: | Line 16: | ||
|gene_description=cell adhesion molecule 2 | |gene_description=cell adhesion molecule 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=oligo_capping{{!}}CAGE{{!}}RAMPAGE{{!}}STRIPE-seq | |||
|nearest_ensembl=ENSG00000175161 | |nearest_ensembl=ENSG00000175161 | ||
|nearest_promoter_id=NM_001256505 | |nearest_promoter_id=NM_001256505 | ||
|nearest_refseq=NM_153184 | |nearest_refseq=NM_153184 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.164578 | |nearest_unigene=Hs.164578 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start=85504435 | |start=85504435 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name= | |transcript_name= | ||
|tss_cluster_detected= | |tss_cluster_detected=4 | ||
|tss_id=rfhg_47406.1 | |tss_id=rfhg_47406.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 14:17, 15 March 2025
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA597322 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | oligo_capping|CAGE|RAMPAGE|STRIPE-seq | |||||||||||||
| TSS cluster detected* | 4 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3453538,EH38E2218237) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -617 |
|---|---|
| Nearest PromoterID: | NM_001256505 |
| Entrez ID: | 253559 |
| Nearest Unigene: | Hs.164578 |
| Nearest Refseq: | NM_153184 |
| Nearest Ensembl: | ENSG00000175161 |
| Gene Name: | |
| Gene Alias: | IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 |
| Gene Type: | protein-coding |
| CpG%: | 0.071429 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |