TSS: Hg 100290.1: Difference between revisions
From referenceTSS
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|HELN1= | |HELN1= | ||
|HUB= | |HUB= | ||
|all_trans=LF355708:-294 MA591285:-294 | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |distance=-294 | ||
|distance_to_tss= | |distance_to_tss=34529 | ||
|end=23786781 | |end=23786781 | ||
|end_of_center_position=23786781 | |||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
|gene_alias=HEL-N1 | |gene_alias=HEL-N1{{!}}HELN1{{!}}HUB | ||
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_name=ELAVL2 | |gene_name=ELAVL2 | ||
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|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
|num_trans= | |num_trans=2 | ||
|species=human | |species=human | ||
|start=23786779 | |start=23786779 | ||
|start_of_center_position=23786780 | |||
|strand=- | |strand=- | ||
|tata_box= | |tata_box=-55(ATTTTTAAAAGG,-,0.00),-54(TTTTTAAAAGGC,+,0.00),38(GCTTATATACTT,+,0.00) | ||
|transcript_name= | |transcript_name=LF355708 MA591285 | ||
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_100290.1 | |tss_id=hg_100290.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} |
Latest revision as of 16:14, 15 June 2021
Basic information about the TSS
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TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 34529 |
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Nearest PromoterID: | NM_001171197 |
Entrez ID: | 1993 |
Nearest Unigene: | Hs.166109 |
Nearest Refseq: | NM_004432 |
Nearest Ensembl: | ENSG00000107105 |
Gene Name: | ELAVL2 |
Gene Alias: | HEL-N1|HELN1|HUB |
Gene Description: | ELAV like RNA binding protein 2 |
Gene Type: | protein-coding |
CpG%: | 0.005 |
GC%: | 0.348259 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -55(ATTTTTAAAAGG,-,0.00),-54(TTTTTAAAAGGC,+,0.00),38(GCTTATATACTT,+,0.00) |