TSS: Rfhg 55131.1: Difference between revisions

Latest revision as of 19:15, 8 December 2023

Basic information about the TSS

TSS ID:	rfhg_55131.1
TSS ID(Version3):	hg_51005.1 hg_51006.1
Species:	human
Chr:	chr4

Start:	781809
End:	781864
Strand:	-

Source datasets

FANTOM5|PRJNA4843412|DRA013844

Protocol

CAGE|NETCAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3539075,EH38E2274176)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	BC040652 AK055583
Distance:	0
GeneID:	100129917
HGNC/MGI_ID:	HGNC:56108
UniProt_ID:

Gene_name:	LOC100129917
Gene_symbol:	PCGF3-AS1
Gene_synonyms:
Gene_source:	HGNC:56108

TATA-Box annotation

Distance to TSS:	12
Nearest PromoterID:	NR_036512
Entrez ID:	100129917
Nearest Unigene:	Hs.731755
Nearest Refseq:	NR_036511
Nearest Ensembl:	ENSG00000249592
Gene Name:	LOC100129917
Gene Alias:	-
Gene Description:	uncharacterized LOC100129917
Gene Type:	ncRNA
CpG%:	0.072727
GC%:	0.660714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:56108
+|methods=CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000249592
 |nearest_promoter_id=NR_036512
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=781809
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=BC040652 AK055583
+|tss_cluster_detected=3
 |tss_id=rfhg_55131.1
 |tss_id_v3=hg_51005.1;hg_51006.1