TSS: Rfhg 55543.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001394162.1:-10 NM_198227.2:-10 AK308734:-21 ENST00000506998.5:-22 AF030109:-211 ENST00000338806.4:-329 | |||
|annotation=promoter-TSS (NM_198227) | |annotation=promoter-TSS (NM_198227) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=regulator of G protein signaling 12 | |gene_description=regulator of G protein signaling 12 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000159788 | |nearest_ensembl=ENSG00000159788 | ||
|nearest_promoter_id=NM_198227 | |nearest_promoter_id=NM_198227 | ||
|nearest_refseq=NM_002926 | |nearest_refseq=NM_002926 | ||
|nearest_transcripts=AK308734:-21 ENST00000506998.5:-22 AF030109:-211 ENST00000338806.4:-329 | |||
|nearest_unigene=Hs.527061 | |nearest_unigene=Hs.527061 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=3370208 | |start=3370208 | ||
Latest revision as of 16:51, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3542178,EH38E2276402) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_198227 |
| Entrez ID: | 6002 |
| Nearest Unigene: | Hs.527061 |
| Nearest Refseq: | NM_002926 |
| Nearest Ensembl: | ENSG00000159788 |
| Gene Name: | |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.071429 |
| GC%: | 0.533333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |