TSS: Rfhg 55831.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000310085.6:0 NM_153376.3:0 AK075056:0 BC112274:0 BC105055:0 HQ258308:0 KJ900527:0 KJ900528:0 | |||
|annotation=promoter-TSS (NM_152293) | |annotation=promoter-TSS (NM_152293) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=coiled-coil domain containing 96 | |gene_description=coiled-coil domain containing 96 | ||
|gene_id=257236 | |gene_id=257236 | ||
|gene_name= | |gene_name=coiled-coil domain containing 96 | ||
|gene_source=HGNC:26900 | |gene_source=HGNC:26900 | ||
|gene_symbol=CCDC96 | |gene_symbol=CCDC96 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26900 | |hgnc_mgi_id=HGNC:26900 | ||
|methods=CAGE{{!}}TSS_database | |||
|nearest_ensembl=ENSG00000173013 | |nearest_ensembl=ENSG00000173013 | ||
|nearest_promoter_id=NM_153376 | |nearest_promoter_id=NM_153376 | ||
|nearest_refseq=NM_153376 | |nearest_refseq=NM_153376 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.656757 | |nearest_unigene=Hs.656757 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start=7042931 | |start=7042931 | ||
Latest revision as of 16:57, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3545719,EH38E2278794) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_153376 |
| Entrez ID: | 257236 |
| Nearest Unigene: | Hs.656757 |
| Nearest Refseq: | NM_153376 |
| Nearest Ensembl: | ENSG00000173013 |
| Gene Name: | coiled-coil domain containing 96 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.106667 |
| GC%: | 0.684211 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.