TSS: Rfhg 5871.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF356427:260 MA592004:260 ENST00000321358.12:269 NM_004559.5:269 AK311708:278 AK309996:278 M83234:278 M85234:278 BC070084:281 BC098435:288 ENST00000332220.10:291 Z70765:291 BC106045:292 J03827:292 BC072014:294 BC065571:294 BC071708:294 BC090038:294 BC038384:297 BC000064:299 BC010430:304 M24070:306 BC002411:306 L28809:336 BC015208:354 DQ894802:414 DQ891609:414 AB385072:415 | |||
|annotation=promoter-TSS (NM_004559) | |annotation=promoter-TSS (NM_004559) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=Y-box binding protein 1 | |gene_description=Y-box binding protein 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000065978 | |nearest_ensembl=ENSG00000065978 | ||
|nearest_promoter_id=NM_004559 | |nearest_promoter_id=NM_004559 | ||
|nearest_refseq=NM_004559 | |nearest_refseq=NM_004559 | ||
|nearest_transcripts=ENST00000321358.12:269 NM_004559.5:269 AK311708:278 AK309996:278 M83234:278 M85234:278 BC070084:281 BC098435:288 ENST00000332220.10:291 Z70765:291 BC106045:292 J03827:292 BC072014:294 BC065571:294 BC071708:294 BC090038:294 BC038384:297 BC000064:299 BC010430:304 M24070:306 BC002411:306 L28809:336 BC015208:354 DQ894802:414 DQ891609:414 AB385072:415 | |||
|nearest_unigene=Hs.473583 | |nearest_unigene=Hs.473583 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=42682144 | |start=42682144 | ||
Latest revision as of 17:51, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2157487,EH38E1341856) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -272 |
|---|---|
| Nearest PromoterID: | NM_004559 |
| Entrez ID: | 4904 |
| Nearest Unigene: | Hs.473583 |
| Nearest Refseq: | NM_004559 |
| Nearest Ensembl: | ENSG00000065978 |
| Gene Name: | |
| Gene Alias: | BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 |
| Gene Type: | protein-coding |
| CpG%: | 0.200000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000321358.12:269 NM_004559.5:269 AK311708:278 AK309996:278 M83234:278 M85234:278 BC070084:281 BC098435:288 ENST00000332220.10:291 Z70765:291 BC106045:292 J03827:292 BC072014:294 BC065571:294 BC071708:294 BC090038:294 BC038384:297 BC000064:299 BC010430:304 M24070:306 BC002411:306 L28809:336 BC015208:354 DQ894802:414 DQ891609:414 AB385072:415" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.