TSS: Hg 10040.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 2: | Line 2: | ||
|DDR3= | |DDR3= | ||
|DR3= | |DR3= | ||
|GEF720= | |||
|LARD= | |LARD= | ||
|PLEKHG5= | |||
|TNFRSF12= | |TNFRSF12= | ||
|TR3= | |TR3= | ||
Line 10: | Line 12: | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance= | |distance=NA | ||
|distance_to_tss=-8431 | |distance_to_tss=-8431 | ||
|end=6474644 | |end=6474644 | ||
|end_of_center_position=6474627 | |||
|entrez_id=8718 | |entrez_id=8718 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=APO-3 | |gene_alias=APO-3{{!}}DDR3{{!}}DR3{{!}}GEF720{{!}}LARD{{!}}PLEKHG5{{!}}TNFRSF12{{!}}TR3{{!}}TRAMP{{!}}WSL-1{{!}}WSL-LR | ||
|gene_description=TNF receptor superfamily member 25 | |gene_description=TNF receptor superfamily member 25 | ||
|gene_name=TNFRSF25 | |gene_name=TNFRSF25 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000215788 | |nearest_ensembl=ENSG00000215788 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_148966 | ||
|nearest_refseq=NM_003790 | |nearest_refseq=NM_003790 | ||
|nearest_unigene=Hs.462529 | |nearest_unigene=Hs.462529 | ||
Line 26: | Line 29: | ||
|species=human | |species=human | ||
|start=6474608 | |start=6474608 | ||
|start_of_center_position=6474626 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name= |
Latest revision as of 16:16, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -8431 |
---|---|
Nearest PromoterID: | NM_148966 |
Entrez ID: | 8718 |
Nearest Unigene: | Hs.462529 |
Nearest Refseq: | NM_003790 |
Nearest Ensembl: | ENSG00000215788 |
Gene Name: | TNFRSF25 |
Gene Alias: | APO-3|DDR3|DR3|GEF720|LARD|PLEKHG5|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR |
Gene Description: | TNF receptor superfamily member 25 |
Gene Type: | protein-coding |
CpG%: | 0.04 |
GC%: | 0.651741 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |