TSS: Rfhg 64189.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000500914.6:-139 NR_134242.1:-139 NR_134241.1:-139 BC040577:-139 ENST00000499322.7:339 BC043556:339 ENST00000663396.1:390 | |||
|annotation=non-coding (NR_134242, exon 1 of 7) | |annotation=non-coding (NR_134242, exon 1 of 7) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=uncharacterized LOC101930370 | |gene_description=uncharacterized LOC101930370 | ||
|gene_id=101930370 | |gene_id=101930370 | ||
|gene_name= | |gene_name=GALNT7 divergent transcript | ||
|gene_source=HGNC:55604 | |gene_source=HGNC:55604 | ||
|gene_symbol=GALNT7-DT | |gene_symbol=GALNT7-DT | ||
| Line 21: | Line 22: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:55604 | |hgnc_mgi_id=HGNC:55604 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000245213 | |nearest_ensembl=ENSG00000245213 | ||
|nearest_promoter_id=NR_134241 | |nearest_promoter_id=NR_134241 | ||
|nearest_refseq=NR_134241 | |nearest_refseq=NR_134241 | ||
|nearest_transcripts=ENST00000499322.7:339 BC043556:339 ENST00000663396.1:390 | |||
|nearest_unigene=Hs.563191 | |nearest_unigene=Hs.563191 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=173169494 | |start=173169494 | ||
Latest revision as of 19:37, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3656146,EH38E2344265) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 149 |
|---|---|
| Nearest PromoterID: | NR_134241 |
| Entrez ID: | 101930370 |
| Nearest Unigene: | Hs.563191 |
| Nearest Refseq: | NR_134241 |
| Nearest Ensembl: | ENSG00000245213 |
| Gene Name: | GALNT7 divergent transcript |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.157895 |
| GC%: | 0.900000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.