TSS: Rfhg 67567.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF209921:-45 MA445498:-45 BC004107:138 ENST00000396947.7:177 ENST00000256759.8:180 NM_013409.3:180 NM_006350.5:180 LF212555:-340 MA448132:-340 AB451474:343 AB451330:343 CR541813:343 DQ896745:343 DQ893433:343 LF332747:483 MA568324:483 | |||
|annotation=promoter-TSS (NM_006350) | |annotation=promoter-TSS (NM_006350) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=follistatin | |gene_description=follistatin | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000134363 | |nearest_ensembl=ENSG00000134363 | ||
|nearest_promoter_id=NM_013409 | |nearest_promoter_id=NM_013409 | ||
|nearest_refseq=NM_006350 | |nearest_refseq=NM_006350 | ||
|nearest_transcripts=BC004107:138 ENST00000396947.7:177 ENST00000256759.8:180 NM_013409.3:180 NM_006350.5:180 LF212555:-340 MA448132:-340 AB451474:343 AB451330:343 CR541813:343 DQ896745:343 DQ893433:343 LF332747:483 MA568324:483 | |||
|nearest_unigene=Hs.9914 | |nearest_unigene=Hs.9914 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=ENCODE | |||
|species=human | |species=human | ||
|start=53480448 | |start=53480448 | ||
Latest revision as of 20:42, 15 March 2025
Basic information about the TSS
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| Source datasets | ENCODE | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3702087,EH38E2371557) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -181 |
|---|---|
| Nearest PromoterID: | NM_013409 |
| Entrez ID: | 10468 |
| Nearest Unigene: | Hs.9914 |
| Nearest Refseq: | NM_006350 |
| Nearest Ensembl: | ENSG00000134363 |
| Gene Name: | |
| Gene Alias: | FS |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |