TSS: Rfhg 68269.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000231524.14:0 ENST00000381018.7:0 ENST00000274327.11:0 ENST00000506400.1:0 ENST00000505205.1:0 NM_001656.4:0 NM_033227.3:0 NM_033228.3:0 BC022510:0 AF230397:0 AF230398:0 AF230399:0 L04510:0 AK292814:0 KJ890698:14 DQ893646:15 DQ895584:15 AB384982:15 CU692664:15 LF209895:-24 MA445472:-24 LP895528:-248 LF332494:395 MA568071:395
|annotation=promoter-TSS (NM_001365341)
|annotation=promoter-TSS (NM_001365341)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=tripartite motif containing 23
|gene_description=tripartite motif containing 23
|gene_id=373
|gene_id=373
|gene_name=TRIM23
|gene_name=tripartite motif containing 23
|gene_source=HGNC:660
|gene_source=HGNC:660
|gene_symbol=TRIM23
|gene_symbol=TRIM23
Line 21: Line 22:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:660
|hgnc_mgi_id=HGNC:660
|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE{{!}}TIF-seq2{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}NETCAGE
|nearest_ensembl=ENSG00000113595
|nearest_ensembl=ENSG00000113595
|nearest_promoter_id=NM_033227
|nearest_promoter_id=NM_033227
|nearest_refseq=NM_001656
|nearest_refseq=NM_001656
|nearest_transcripts=KJ890698:14 DQ893646:15 DQ895584:15 AB384982:15 CU692664:15 LF209895:-24 MA445472:-24 LP895528:-248 LF332494:395 MA568071:395
|nearest_unigene=Hs.792
|nearest_unigene=Hs.792
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
|species=human
|species=human
|start=65624289
|start=65624289

Latest revision as of 20:54, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_68269.1
TSS ID(Version3):hg_61955.1
Species:human
Chr:chr5
Start:65624289
End:65624368
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|PRJNA401781|PRJNA615891|PRJNA548673
|PRJDB5282|PRJNA4843412|DRA013844
ProtocolCAGE|TSS_database|RAMPAGE|TIF-seq2|oligo_capping
|ReCappable-seq|SLIC_CAGE|C1CAGE|NETCAGE
TSS cluster detected*13

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3711602,EH38E2377932)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000231524.14:0
ENST00000381018.7:0
ENST00000274327.11:0
ENST00000506400.1:0
ENST00000505205.1:0
BC022510:0
AF230397:0
AF230398:0
AF230399:0
L04510:0
AK292814:0
GeneID:373
HGNC/MGI_ID:HGNC:660
UniProt_ID:A8K9U9 D6RBN4 D6RD22 P36406
Nearer transcript ids and distances:
  • KJ890698:14
  • DQ893646:15
  • DQ895584:15
  • AB384982:15
  • CU692664:15
  • LF209895:-24
  • MA445472:-24
  • LP895528:-248
  • LF332494:395
  • MA568071:395
view more...
Gene_name:tripartite motif containing 23
Gene_symbol:TRIM23
Gene_synonyms:ARD1 RNF46
Gene_source:HGNC:660



TATA-Box annotation

Distance to TSS:5
Nearest PromoterID:NM_033227
Entrez ID:373
Nearest Unigene:Hs.792
Nearest Refseq:NM_001656
Nearest Ensembl:ENSG00000113595
Gene Name:tripartite motif containing 23
Gene Alias:ARD1|ARFD1|RNF46
Gene Type:protein-coding
CpG%:0.050633
GC%:0.637500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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