TSS: Rfhg 68572.1: Difference between revisions

Latest revision as of 20:59, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_68572.1
Species:	human
Chr:	chr5

Start:	70925082
End:	70925094
Strand:	+

Source datasets

EPD|DRA000914

Protocol

TSS_database|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000380707.9:0
GeneID:	6606
HGNC/MGI_ID:	HGNC:11117
UniProt_ID:	Q16637
Nearer transcript ids and distances:	ENST00000506163.5:1 MH500529:4 ENST00000506239.6:-7 ENST00000625245.2:10 ENST00000351205.8:10 ENST00000514951.5:-26 ENST00000503079.6:-52 NM_022874.2:-141 NM_001297715.1:-141 view more...

Gene_name:	survival of motor neuron 1, telomeric
Gene_symbol:	SMN1
Gene_synonyms:	BCD541 GEMIN1 SMA1 SMA2 SMA3 SMNT TDRD16A
Gene_source:	HGNC:11117

TATA-Box annotation

Distance to TSS:	147
Nearest PromoterID:	NM_022876
Entrez ID:	6607
Nearest Unigene:	Hs.202179
Nearest Refseq:	NM_017411
Nearest Ensembl:	ENSG00000205571
Gene Name:	survival of motor neuron 1, telomeric
Gene Alias:	BCD541\|C-BCD541\|GEMIN1\|SMNC\|TDRD16B
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.846154
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000380707.9:0 NM_000344.4:0 ENST00000506163.5:1 MH500529:4 ENST00000506239.6:-7 ENST00000625245.2:10 ENST00000351205.8:10 ENST00000514951.5:-26 ENST00000503079.6:-52 NM_022874.2:-141 NM_001297715.1:-141
 |annotation=5' UTR (NM_017411, exon 1 of 9).2
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=survival of motor neuron 2, centromeric
 |gene_id=6606
-|gene_name=SMN2
+|gene_name=survival of motor neuron 1, telomeric
 |gene_source=HGNC:11117
 |gene_symbol=SMN1
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:11117
+|methods=TSS_database{{!}}CAGE
 |nearest_ensembl=ENSG00000205571
 |nearest_promoter_id=NM_022876
 |nearest_refseq=NM_017411
+|nearest_transcripts=ENST00000506163.5:1 MH500529:4 ENST00000506239.6:-7 ENST00000625245.2:10 ENST00000351205.8:10 ENST00000514951.5:-26 ENST00000503079.6:-52 NM_022874.2:-141 NM_001297715.1:-141
 |nearest_unigene=Hs.202179
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD{{!}}DRA000914
 |species=human
 |start=70925082