TSS: Rfhg 73203.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000517434.3:0 NM_032086.2:0 NM_018919.3:0 AB209178:0 BC146651:0 ENST00000610583.1:42 BC136702:42 BC136703:42 AF152513:133 AF152326:133 | |||
|annotation=promoter-TSS (NM_032086) | |annotation=promoter-TSS (NM_032086) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=protocadherin gamma subfamily A, 6 | |gene_description=protocadherin gamma subfamily A, 6 | ||
|gene_id=56109 | |gene_id=56109 | ||
|gene_name= | |gene_name=protocadherin gamma subfamily A, 6 | ||
|gene_source=HGNC:8704 | |gene_source=HGNC:8704 | ||
|gene_symbol=PCDHGA6 | |gene_symbol=PCDHGA6 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:8704 | |hgnc_mgi_id=HGNC:8704 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000253731 | |nearest_ensembl=ENSG00000253731 | ||
|nearest_promoter_id=NM_018919 | |nearest_promoter_id=NM_018919 | ||
|nearest_refseq=NM_018919 | |nearest_refseq=NM_018919 | ||
|nearest_transcripts=ENST00000610583.1:42 BC136702:42 BC136703:42 AF152513:133 AF152326:133 | |||
|nearest_unigene=Hs.368160 | |nearest_unigene=Hs.368160 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=141373878 | |start=141373878 | ||
Latest revision as of 22:27, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3767984,EH38E2414661) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_018919 |
| Entrez ID: | 56109 |
| Nearest Unigene: | Hs.368160 |
| Nearest Refseq: | NM_018919 |
| Nearest Ensembl: | ENSG00000253731 |
| Gene Name: | protocadherin gamma subfamily A, 6 |
| Gene Alias: | PCDH-GAMMA-A6 |
| Gene Type: | protein-coding |
| CpG%: | 0.027397 |
| GC%: | 0.418919 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.