TSS: Rfhg 78665.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001346817.1:183 NM_001346818.1:183 ENST00000309983.5:275 NM_000367.5:275 BC009596:278 BC005339:278 U12387:288 AK310420:293 S62904:299 | |||
|annotation=promoter-TSS (NM_153042) | |annotation=promoter-TSS (NM_153042) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=lysine demethylase 1B | |gene_description=lysine demethylase 1B | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=RAMPAGE | |||
|nearest_ensembl=ENSG00000165097 | |nearest_ensembl=ENSG00000165097 | ||
|nearest_promoter_id=NM_001364614 | |nearest_promoter_id=NM_001364614 | ||
|nearest_refseq=NM_153042 | |nearest_refseq=NM_153042 | ||
|nearest_transcripts=ENST00000309983.5:275 NM_000367.5:275 BC009596:278 BC005339:278 U12387:288 AK310420:293 S62904:299 | |||
|nearest_unigene=Hs.709336 | |nearest_unigene=Hs.709336 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781 | |||
|species=human | |species=human | ||
|start=18155352 | |start=18155352 | ||
Latest revision as of 00:08, 16 March 2025
Basic information about the TSS
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| Source datasets | PRJNA401781 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | RAMPAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3820071,EH38E2451291) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -69 |
|---|---|
| Nearest PromoterID: | NM_001364614 |
| Entrez ID: | 221656 |
| Nearest Unigene: | Hs.709336 |
| Nearest Refseq: | NM_153042 |
| Nearest Ensembl: | ENSG00000165097 |
| Gene Name: | |
| Gene Alias: | AOF1|C6orf193|LSD2 |
| Gene Type: | protein-coding |
| CpG%: | 0.333333 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |