TSS: Rfhg 79334.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000343677.4:227 NM_005319.4:227 AK290947:227 D28457:227 BC002649:233 BC052623:247 CU678090:268 KJ891320:268 AB590706:268 AB451259:269 EU446960:269 EU832089:269 EU832181:269 AB451385:269
|annotation=promoter-TSS (NM_005319)
|annotation=promoter-TSS (NM_005319)
|ccre_category=pELS
|ccre_category=pELS
Line 15: Line 16:
|gene_description=histone cluster 1 H1 family member c
|gene_description=histone cluster 1 H1 family member c
|gene_id=3006
|gene_id=3006
|gene_name=HIST1H1C
|gene_name=H1.2 linker histone, cluster member
|gene_source=HGNC:4716
|gene_source=HGNC:4716
|gene_symbol=H1-2
|gene_symbol=H1-2
Line 21: Line 22:
|gene_type=protein-coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:4716
|hgnc_mgi_id=HGNC:4716
|methods=NETCAGE
|nearest_ensembl=ENSG00000187837
|nearest_ensembl=ENSG00000187837
|nearest_promoter_id=NM_005319
|nearest_promoter_id=NM_005319
|nearest_refseq=NM_005319
|nearest_refseq=NM_005319
|nearest_transcripts=BC002649:233 BC052623:247 CU678090:268 KJ891320:268 AB590706:268 AB451259:269 EU446960:269 EU832089:269 EU832181:269 AB451385:269
|nearest_unigene=Hs.7644
|nearest_unigene=Hs.7644
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=PRJNA4843412
|species=human
|species=human
|start=26056697
|start=26056697

Latest revision as of 00:21, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_79334.1
Species:human
Chr:chr6
Start:26056697
End:26056703
Strand:-
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D3826683,EH38E2455714)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000343677.4:227
AK290947:227
D28457:227
GeneID:3006
HGNC/MGI_ID:HGNC:4716
UniProt_ID:P16403
Nearer transcript ids and distances:
  • BC002649:233
  • BC052623:247
  • CU678090:268
  • KJ891320:268
  • AB590706:268
  • AB451259:269
  • EU446960:269
  • EU832089:269
  • EU832181:269
  • AB451385:269
view more...
Gene_name:H1.2 linker histone, cluster member
Gene_symbol:H1-2
Gene_synonyms:H1.2 H1c H1s-1
Gene_source:HGNC:4716



TATA-Box annotation

Distance to TSS:-229
Nearest PromoterID:NM_005319
Entrez ID:3006
Nearest Unigene:Hs.7644
Nearest Refseq:NM_005319
Nearest Ensembl:ENSG00000187837
Gene Name:H1.2 linker histone, cluster member
Gene Alias:H1.2|H1C|H1F2|H1s-1
Gene Type:protein-coding
CpG%:0.000000
GC%:0.285714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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