TSS: Rfhg 81285.1: Difference between revisions

Latest revision as of 00:58, 16 March 2025

Basic information about the TSS

TSS ID:	rfhg_81285.1
Species:	human
Chr:	chr6

Start:	32894309
End:	32894320
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3832619,EH38E2460210)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_037178.1:-133 NR_037177.1:-133
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AK057104:403

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	138
Nearest PromoterID:	NR_037178
Entrez ID:	100294145
Nearest Unigene:	Hs.559456
Nearest Refseq:	NR_037177
Nearest Ensembl:
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.416667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_037178.1:-133 NR_037177.1:-133 AK057104:403
 |annotation=non-coding (NR_037177, exon 1 of 2)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC100294145
 |gene_id=
-|gene_name=LOC100294145
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=
 |nearest_promoter_id=NR_037178
 |nearest_refseq=NR_037177
+|nearest_transcripts=AK057104:403
 |nearest_unigene=Hs.559456
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=32894309