TSS: Rfhg 81816.1: Difference between revisions

Latest revision as of 03:31, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_81816.1
Species:	human
Chr:	chr6

Start:	35017472
End:	35017480
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3834939,EH38E2462006)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	DQ582836
Distance:	394
GeneID:
HGNC/MGI_ID:
UniProt_ID:

Gene_name:	TCP11
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	123863
Nearest PromoterID:	NR_158874
Entrez ID:	6954
Nearest Unigene:	Hs.435371
Nearest Refseq:	NM_018679
Nearest Ensembl:	ENSG00000124678
Gene Name:	TCP11
Gene Alias:	D6S230E\|FPPR
Gene Description:	t-complex 11
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000124678
 |nearest_promoter_id=NR_158874
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=35017472