TSS: Rfhg 85621.1: Difference between revisions
From referenceTSS
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|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:21553 | |hgnc_mgi_id=HGNC:21553 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000203809 | |nearest_ensembl=ENSG00000203809 | ||
|nearest_promoter_id=NR_046407 | |nearest_promoter_id=NR_046407 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=104941364 | |start=104941364 | ||
Latest revision as of 04:41, 9 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3880321,EH38E2489629) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -843 |
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| Nearest PromoterID: | NR_046407 |
| Entrez ID: | 100113403 |
| Nearest Unigene: | Hs.649249 |
| Nearest Refseq: | NR_046407 |
| Nearest Ensembl: | ENSG00000203809 |
| Gene Name: | LIN28B-AS1 |
| Gene Alias: | C6orf220|LINC00577|dJ439I14.1 |
| Gene Description: | LIN28B antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.083333 |
| GC%: | 0.692308 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.