TSS: Rfhg 86068.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000338882.5:0 NM_001123364.3:0 NM_001354594.2:0 ENST00000490043.1:336 | |||
|annotation=promoter-TSS (NM_001354594) | |annotation=promoter-TSS (NM_001354594) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=methyltransferase like 24 | |gene_description=methyltransferase like 24 | ||
|gene_id=728464 | |gene_id=728464 | ||
|gene_name= | |gene_name=methyltransferase like 24 | ||
|gene_source=HGNC:21566 | |gene_source=HGNC:21566 | ||
|gene_symbol=METTL24 | |gene_symbol=METTL24 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:21566 | |hgnc_mgi_id=HGNC:21566 | ||
|methods=CAGE | |||
|nearest_ensembl=ENSG00000053328 | |nearest_ensembl=ENSG00000053328 | ||
|nearest_promoter_id=NM_001354594 | |nearest_promoter_id=NM_001354594 | ||
|nearest_refseq=NM_001123364 | |nearest_refseq=NM_001123364 | ||
|nearest_transcripts=ENST00000490043.1:336 | |||
|nearest_unigene=Hs.634429 | |nearest_unigene=Hs.634429 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start=110358313 | |start=110358313 | ||
Latest revision as of 02:29, 16 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3885299,EH38E2493415) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -66 |
|---|---|
| Nearest PromoterID: | NM_001354594 |
| Entrez ID: | 728464 |
| Nearest Unigene: | Hs.634429 |
| Nearest Refseq: | NM_001123364 |
| Nearest Ensembl: | ENSG00000053328 |
| Gene Name: | methyltransferase like 24 |
| Gene Alias: | C6orf186 |
| Gene Type: | protein-coding |
| CpG%: | 0.058824 |
| GC%: | 0.692308 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.