TSS: Rfhg 87646.1: Difference between revisions

Latest revision as of 02:59, 16 March 2025

Basic information about the TSS

TSS ID:	rfhg_87646.1
Species:	human
Chr:	chr6

Start:	135880832
End:	135880841
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3904642,EH38E2506108)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AJ606332:32
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000655005.1:-101

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	29135
Nearest PromoterID:	NM_018945
Entrez ID:	27115
Nearest Unigene:	Hs.744230
Nearest Refseq:	NM_018945
Nearest Ensembl:	ENSG00000171408
Gene Name:
Gene Alias:	bA472E5.1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AJ606332:32 ENST00000655005.1:-101
 |annotation=intron (NM_018945, intron 1 of 12)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=phosphodiesterase 7B
 |gene_id=
-|gene_name=PDE7B
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 21: / Line 22: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000171408
 |nearest_promoter_id=NM_018945
 |nearest_refseq=NM_018945
+|nearest_transcripts=ENST00000655005.1:-101
 |nearest_unigene=Hs.744230
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=135880832