TSS: Rfhg 8925.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000370491.7:0 ENST00000321792.5:0 ENST00000413769.1:0 NR_146183.1:0 NR_146185.1:0 NM_001349450.1:0 NM_001349449.1:0 AY028624:0 AK057176:0 AL832554:0 AK315917:76 AK301326:86 ENST00000260508.9:104 ENST00000652648.1:104 NM_001008661.3:104 NM_001008662.3:104 NR_146184.2:104 NM_001162536.3:104 NM_019610.6:104 CR627392:111 BC012942:114 AL833593:129 ENST00000370486.1:-173 ENST00000399794.6:-180 NM_001349448.1:-180 NM_001349447.1:-180 | |||
|annotation=promoter-TSS (NR_146183) | |annotation=promoter-TSS (NR_146183) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=kynurenine aminotransferase 3 | |gene_description=kynurenine aminotransferase 3 | ||
|gene_id=494115 56267 | |gene_id=494115 56267 | ||
|gene_name= | |gene_name=RBMX like 1; kynurenine aminotransferase 3 | ||
|gene_source=HGNC:25073 HGNC:33238 | |gene_source=HGNC:25073 HGNC:33238 | ||
|gene_symbol=KYAT3 RBMXL1 | |gene_symbol=KYAT3 RBMXL1 | ||
| Line 21: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25073 HGNC:33238 | |hgnc_mgi_id=HGNC:25073 HGNC:33238 | ||
|methods=CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}NETCAGE | |||
|nearest_ensembl=ENSG00000137944 | |nearest_ensembl=ENSG00000137944 | ||
|nearest_promoter_id=NM_001349449 | |nearest_promoter_id=NM_001349449 | ||
|nearest_refseq=NM_001008661 | |nearest_refseq=NM_001008661 | ||
|nearest_transcripts=AK315917:76 AK301326:86 ENST00000260508.9:104 ENST00000652648.1:104 NM_001008661.3:104 NM_001008662.3:104 NR_146184.2:104 NM_001162536.3:104 NM_019610.6:104 CR627392:111 BC012942:114 AL833593:129 ENST00000370486.1:-173 ENST00000399794.6:-180 NM_001349448.1:-180 NM_001349447.1:-180 | |||
|nearest_unigene=Hs.481898 | |nearest_unigene=Hs.481898 | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=88992733 | |start=88992733 | ||
| Line 32: | Line 36: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000370491.7 ENST00000321792.5 ENST00000413769.1 AY028624 AK057176 AL832554 | |transcript_name=ENST00000370491.7 ENST00000321792.5 ENST00000413769.1 AY028624 AK057176 AL832554 | ||
|tss_cluster_detected= | |tss_cluster_detected=8 | ||
|tss_id=rfhg_8925.1 | |tss_id=rfhg_8925.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A1B0GUK8 Q6YP21 Q96E39 | |uniprot_id=A0A1B0GUK8 Q6YP21 Q96E39 | ||
}} | }} | ||
Latest revision as of 03:31, 16 March 2025
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA548673|PRJNA615891|PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|oligo_capping|ReCappable-seq|SLIC_CAGE|TIF-seq2|NETCAGE | |||||||||||||
| TSS cluster detected* | 8 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2194414,EH38E1365653) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_001349449 |
| Entrez ID: | 56267 |
| Nearest Unigene: | Hs.481898 |
| Nearest Refseq: | NM_001008661 |
| Nearest Ensembl: | ENSG00000137944 |
| Gene Name: | RBMX like 1; kynurenine aminotransferase 3 |
| Gene Alias: | CCBL2|KAT3|KATIII |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.520833 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.
Property "Nearest transcripts" (as page type) with input value "AK315917:76 AK301326:86 ENST00000260508.9:104 ENST00000652648.1:104 NM_001008661.3:104 NM_001008662.3:104 NR_146184.2:104 NM_001162536.3:104 NM_019610.6:104 CR627392:111 BC012942:114 AL833593:129 ENST00000370486.1:-173 ENST00000399794.6:-180 NM_001349448.1:-180 NM_001349447.1:-180" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.