TSS: Rfhg 934.1: Difference between revisions

Latest revision as of 07:04, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_934.1
Species:	human
Chr:	chr1

Start:	6419909
End:	6419926
Strand:	-

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2121394,EH38E1314426)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000377834.8 ENST00000489730.1 AK091122
Distance:	0
GeneID:	54626
HGNC/MGI_ID:	HGNC:16005
UniProt_ID:	K7EJQ0 Q9Y543

Gene_name:	HES2
Gene_symbol:	HES2
Gene_synonyms:	bHLHb40
Gene_source:	HGNC:16005

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_019089
Entrez ID:	54626
Nearest Unigene:	Hs.118727
Nearest Refseq:	NM_019089
Nearest Ensembl:	ENSG00000069812
Gene Name:	HES2
Gene Alias:	bHLHb40
Gene Description:	hes family bHLH transcription factor 2
Gene Type:	protein-coding
CpG%:	0.176471
GC%:	0.777778
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16005
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000069812
 |nearest_promoter_id=NM_019089
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=6419909
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000377834.8 ENST00000489730.1 AK091122
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_934.1
 |tss_score=1
 |uniprot_id=K7EJQ0 Q9Y543
 }}